| 01/03/25 | MMR was changed: from 'Antimicrobial Resistance (AR) gene prediction was performed using a combined and deduplicated AR database (ResGANNCBI) from ResFinder, ARG-ANNOT, and NCBI AMRFinder(primary Database) accessed on 2021-05-07. AR drug classes are assigned according to these databases. This analysis does not include mutations that may result in antimicrobial resistance, or resistance determinants added to newer versions of databases used, or other antimicrobial resistance gene databases. Additional AR genes other than those listed, may be present. For resistance determinant detection, 99-100% sequence identity and 100% sequence coverage from GAMMA (primary AR gene calling tool) and SRST2 was used. GAMMA uses amino acid sequence to assign gene alleles from assemblies; SRST2 uses nucleotide sequence to assign gene alleles from sequencing reads and is used to resolve AR gene calls located on the edges of assembly scaffolds detected by GAMMA. Biosample accession numbers have been provided so that users can analyze the raw sequencing data on their own, if so desired. *MLST Type (and scheme), as determined by Torsten Seemann's MLST program. For Enterobacterales the Pasteur MLST schemes are used except for E. coli for which both the Pasteur and Achtman schemes are reported. Similarly, for Acinetobacter baumannii complex, both Pasteur and Oxford MLST schemes are used and reported. SUB=novel MLST identified and "submitted". Dash (-) indicates no pubMLST scheme is available for that species. Truncated porins are defined as porin genes detected with ≥80% sequence identity and ≥80% sequence coverage and predicted to have an internal stop codon by c-SSTAR (https://github.com/chrisgulvik/c-SSTAR). ** Prescence of Efflux Pump may not be associated with resistance.' to 'The resistance mechanisms listed were identified by analysis of whole genome sequence using the ResFinder database (last updated June 2, 2016 and accessed on October 25, 2016). This analysis does not include mutations that may result in antibiotic resistance or resistance determinants added to newer versions of the ResFinder database or other antimicrobial resistance gene databases. Biosample accession numbers have been provided so that users can analyze the data on their own if so desired.' |
| 01/03/25 | New Isolate added to panel |
| 01/03/25 | INT was updated with a new value for Trimethoprim/sulfamethoxazole: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Trimethoprim/sulfamethoxazole: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Erythromycin: from '---' to '0.5' |
| 01/03/25 | Drug was added: 'Trimethoprim/sulfamethoxazole' |
| 01/03/25 | INT was updated with a new value for Erythromycin: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Trimethoprim/sulfamethoxazole: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Erythromycin: from '---' to '0.5' |
| 01/03/25 | Drug was added: 'Erythromycin' |
| 01/03/25 | INT was updated with a new value for Tetracycline: from '---' to 'S' |
| 01/03/25 | INT was updated with a new value for Linezolid: from '---' to '---' |
| 01/03/25 | INT was updated with a new value for Doxycycline: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Tetracycline: from '---' to '<=1' |
| 01/03/25 | MIC was updated with a new value for Linezolid: from '---' to '4' |
| 01/03/25 | MIC was updated with a new value for Doxycycline: from '---' to '<=1' |
| 01/03/25 | Drug was added: 'Tetracycline' |
| 01/03/25 | Drug was added: 'Linezolid' |
| 01/03/25 | Drug was added: 'Doxycycline' |
| 01/03/25 | INT was updated with a new value for Rifampin: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Rifampin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Penicillin: from '---' to '1' |
| 01/03/25 | MIC was updated with a new value for Levofloxacin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Daptomycin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Ceftaroline: from '---' to '<=0.5' |
| 01/03/25 | Drug was added: 'Rifampin' |
| 01/03/25 | INT was updated with a new value for Penicillin: from '---' to 'R' |
| 01/03/25 | INT was updated with a new value for Levofloxacin: from '---' to '---' |
| 01/03/25 | INT was updated with a new value for Daptomycin: from '---' to '---' |
| 01/03/25 | INT was updated with a new value for Ceftaroline: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Rifampin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Penicillin: from '---' to '1' |
| 01/03/25 | MIC was updated with a new value for Levofloxacin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Daptomycin: from '---' to '<=0.5' |
| 01/03/25 | MIC was updated with a new value for Ceftaroline: from '---' to '<=0.5' |
| 01/03/25 | Drug was added: 'Penicillin' |
| 01/03/25 | Drug was added: 'Levofloxacin' |
| 01/03/25 | Drug was added: 'Daptomycin' |
| 01/03/25 | Drug was added: 'Ceftaroline' |
| 01/03/25 | INT was updated with a new value for Mupirocin: from '---' to 'S' |
| 01/03/25 | INT was updated with a new value for Clindamycin: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Mupirocin: from '---' to '<=4' |
| 01/03/25 | MIC was updated with a new value for Clindamycin: from '---' to '<=0.25' |
| 01/03/25 | Drug was added: 'Mupirocin' |
| 01/03/25 | Drug was added: 'Clindamycin' |
| 01/03/25 | Gene was added to Beta-lactam: 'blaZ-mecC ' |
| 01/03/25 | Category was added: Beta-lactam |
| 01/03/25 | INT was updated with a new value for Cefoxitin: from '---' to 'R' |
| 01/03/25 | MIC was updated with a new value for Cefoxitin: from '---' to '16' |
| 01/03/25 | Drug was added: 'Cefoxitin' |
| 01/03/25 | INT was updated with a new value for Oxacillin: from '---' to 'S' |
| 01/03/25 | MIC was updated with a new value for Oxacillin: from '---' to '2' |
| 01/03/25 | Drug was added: 'Oxacillin' |
| 01/03/25 | Source was changed: from '---' to 'nose/throath' |
| 01/03/25 | Location was changed: from '---' to 'Denmark' |
| 01/03/25 | Gene was added to Efflux pumps/Other: 'DHA-1' |
| 01/03/25 | Gene was added to Tetracyclines: 'tet(38)' |
| 01/03/25 | Gene was added to Aminoglycoside: 'aph-STPH' |
| 01/03/25 | Category was added: Efflux pumps/Other |
| 01/03/25 | Category was added: Tetracyclines |
| 01/03/25 | Category was added: Aminoglycoside |
| 01/03/25 | MLST was updated: from '---' to 'ST130(Pasteur)' |
| 01/03/25 | Drug was removed: Mupirocin |
| 01/03/25 | Drug was removed: Colistin |
| 01/03/25 | Drug was removed: Amphotericin B |
| 01/03/25 | Drug was removed: Amikacin |
